contrastName: Contrast name

In acidgenomics/DESeqAnalysis: Acid Genomics DESeq2 Analysis Utilities

Contrast name

Description

Contrast name

Usage

contrastName(object, ...)
contrastName(object, ...) <- value

## S4 method for signature 'DESeqAnalysis'
contrastName(object, i, ...)

## S4 method for signature 'DESeqResults'
contrastName(object, format = c("resultsNames", "title"))

## S4 replacement method for signature 'DESeqResults,character'
contrastName(object) <- value

Arguments

object	Object.
i	Indices specifying elements to extract or replace. Indices are numeric or character vectors, empty (missing), or NULL. For more information: help(topic = "Extract", package = "base")
...	Additional arguments.
format	character(1). Name format to return: resultsNames: Attempt to matching the conventions in resultsNames(). title: Human readable, for plot titles and/or table captions.
value	Value to assign.

Value

character(1). Contrast name.

Note

Updated 2023-12-18.

See Also

• resultsNames().

Examples

data(deseq)

## DESeqAnalysis ====
contrastName(deseq, i = 1L)

acidgenomics/DESeqAnalysis documentation built on March 27, 2024, 10:32 p.m.