| Global functions | |
|---|---|
| !! | Man page |
| !!! | Man page |
| .bindReducedDims | Source code |
| .data | Man page |
| .detectMapping | Source code |
| .env | Man page |
| .fetchGeneData | Source code |
| .fetchReductionData | Source code |
| .fetchReductionExpressionData | Source code |
| .genePoint | Source code |
| .gradientPalette | Source code |
| .group | Source code |
| .hclust | Source code |
| .hideLegendsInPlotlist | Source code |
| .minMax | Source code |
| .percentAbove | Source code |
| .pheatmapAnnotations | Source code |
| .pheatmapArgs | Source code |
| .pheatmapColorPalette | Source code |
| .plotCountsFacet | Source code |
| .plotCountsWide | Source code |
| .plotQcMetric | Source code |
| .plotQcScatterplot | Source code |
| .preparePalette | Source code |
| .quantileBreaks | Source code |
| .rgb | Source code |
| .scaleCols | Source code |
| .scaleMatrix | Source code |
| .scaleRows | Source code |
| AcidPlots | Man page |
| AcidPlots-package | Man page |
| AcidPlotsTestsUrl | Man page |
| acid_discrete_coord_flip | Man page |
| acid_geom_abline | Man page |
| acid_geom_bar | Man page |
| acid_geom_label | Man page |
| acid_geom_label_average | Man page |
| acid_geom_label_repel | Man page |
| acid_pretty_breaks | Man page |
| acid_scale_color_continuous | Man page |
| acid_scale_color_discrete | Man page |
| acid_scale_color_synesthesia_c | Man page |
| acid_scale_color_synesthesia_d | Man page |
| acid_scale_fill_continuous | Man page |
| acid_scale_fill_discrete | Man page |
| acid_scale_fill_synesthesia_c | Man page |
| acid_scale_fill_synesthesia_d | Man page |
| acid_scale_y_continuous_nopad | Man page |
| acid_theme_dark | Man page |
| acid_theme_dracula | Man page |
| acid_theme_light | Man page |
| aes | Man page |
| after_stat | Man page |
| autoScale | Man page |
| blueYellow | Man page Source code |
| darkPalette | Man page |
| draculaPalette | Man page |
| ggplot | Man page |
| ggsave | Man page |
| gradient | Man page Source code |
| iOSDarkPalette | Man page |
| iOSLightPalette | Man page |
| lightPalette | Man page |
| log_breaks | Man page |
| macOSDarkPalette | Man page |
| macOSLightPalette | Man page |
| matchLabels | Man page Source code |
| palettes | Man page |
| percent | Man page |
| plotBarcodeRanks | Man page |
| plotBarcodeRanks,SingleCellExperiment-method | Man page |
| plotCellCounts | Man page |
| plotCellCounts,SingleCellExperiment-method | Man page |
| plotCellCountsPerCluster | Man page |
| plotCellCountsPerCluster,SingleCellExperiment-method | Man page |
| plotCellTypesPerCluster | Man page |
| plotCellTypesPerCluster,SingleCellExperiment,KnownMarkers-method | Man page |
| plotCorrelation | Man page |
| plotCorrelation,DFrame-method | Man page |
| plotCorrelation,Matrix-method | Man page |
| plotCorrelation,SummarizedExperiment-method | Man page |
| plotCorrelation,data.frame-method | Man page |
| plotCorrelation,matrix-method | Man page |
| plotCorrelationHeatmap | Man page |
| plotCorrelationHeatmap,SingleCellExperiment-method | Man page |
| plotCorrelationHeatmap,SummarizedExperiment-method | Man page |
| plotCounts | Man page |
| plotCounts,SingleCellExperiment-method | Man page |
| plotCounts,SummarizedExperiment-method | Man page |
| plotCountsCorrelation | Man page |
| plotCountsCorrelation,matrix,matrix-method | Man page |
| plotCountsCorrelationHeatmap | Man page |
| plotCountsCorrelationHeatmap,matrix,matrix-method | Man page |
| plotCountsPerBiotype | Man page |
| plotCountsPerBiotype,SingleCellExperiment-method | Man page |
| plotCountsPerBiotype,SummarizedExperiment-method | Man page |
| plotCountsPerBroadClass | Man page |
| plotCountsPerBroadClass,SingleCellExperiment-method | Man page |
| plotCountsPerBroadClass,SummarizedExperiment-method | Man page |
| plotCountsPerCell | Man page |
| plotCountsPerCell,SingleCellExperiment-method | Man page |
| plotCountsPerFeature | Man page |
| plotCountsPerFeature,SingleCellExperiment-method | Man page |
| plotCountsPerFeature,SummarizedExperiment-method | Man page |
| plotCountsVsFeatures | Man page |
| plotCountsVsFeatures,SingleCellExperiment-method | Man page |
| plotDots | Man page |
| plotDots,SingleCellExperiment-method | Man page |
| plotFeature | Man page |
| plotFeature,SingleCellExperiment-method | Man page |
| plotFeaturesDetected | Man page |
| plotFeaturesDetected,SingleCellExperiment-method | Man page |
| plotFeaturesDetected,SummarizedExperiment-method | Man page |
| plotFeaturesPerCell | Man page |
| plotFeaturesPerCell,SingleCellExperiment-method | Man page |
| plotGenderMarkers | Man page |
| plotGenderMarkers,SingleCellExperiment-method | Man page |
| plotGenderMarkers,SummarizedExperiment-method | Man page |
| plotHeatmap | Man page |
| plotHeatmap,SingleCellExperiment-method | Man page |
| plotHeatmap,SummarizedExperiment-method | Man page |
| plotKnownMarkers | Man page |
| plotKnownMarkers,SingleCellExperiment,KnownMarkers-method | Man page |
| plotMarker | Man page |
| plotMarker,SingleCellExperiment-method | Man page |
| plotMitoRatio | Man page |
| plotMitoRatio,SingleCellExperiment-method | Man page |
| plotMitoVsCoding | Man page |
| plotMitoVsCoding,SingleCellExperiment-method | Man page |
| plotNovelty | Man page |
| plotNovelty,SingleCellExperiment-method | Man page |
| plotPca | Man page |
| plotPca,SingleCellExperiment-method | Man page |
| plotPca,SummarizedExperiment-method | Man page |
| plotQc | Man page |
| plotQc,SingleCellExperiment-method | Man page |
| plotQc,SummarizedExperiment-method | Man page |
| plotQuantileHeatmap | Man page |
| plotQuantileHeatmap,SingleCellExperiment-method | Man page |
| plotQuantileHeatmap,SummarizedExperiment-method | Man page |
| plotReducedDim | Man page |
| plotReducedDim,SingleCellExperiment-method | Man page |
| plotStackedBarPlot | Man page |
| plotStackedBarPlot,SingleCellExperiment-method | Man page |
| plotSums | Man page |
| plotSums,SummarizedExperiment-method | Man page |
| plotTotalCounts | Man page |
| plotTotalCounts,SingleCellExperiment-method | Man page |
| plotTotalCounts,SummarizedExperiment-method | Man page |
| plotTsne | Man page |
| plotTsne,SingleCellExperiment-method | Man page |
| plotUmap | Man page |
| plotUmap,SingleCellExperiment-method | Man page |
| plotUpset | Man page |
| plotUpset,DFrame-method | Man page |
| plotUpset,data.frame-method | Man page |
| plotUpset,list-method | Man page |
| plotUpset,matrix-method | Man page |
| plotViolin | Man page |
| plotViolin,SingleCellExperiment-method | Man page |
| plotWaterfall | Man page |
| plotWaterfall,DFrame-method | Man page |
| plotWaterfall,SummarizedExperiment-method | Man page |
| plotWaterfall,data.frame-method | Man page |
| plotZerosVsDepth | Man page |
| plotZerosVsDepth,SummarizedExperiment-method | Man page |
| plot_annotation | Man page |
| plot_layout | Man page |
| pretty_breaks | Man page |
| purpleOrange | Man page Source code |
| reexports | Man page |
| scale_colour_synesthesia_c | Man page |
| scale_colour_synesthesia_d | Man page |
| sym | Man page |
| syms | Man page |
| synesthesia | Man page Source code |
| synesthesia_pal | Man page |
| theme_set | Man page |
| themes | Man page |
| wrap_plots | Man page |
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