API for acidgenomics/minimalism
Functions for plotting genomic data

Global functions
.detectMapping Source code
.genePoint Source code
.hclust Source code
.hideLegendsInPlotlist Source code
.pheatmapAnnotations Source code
.pheatmapArgs Source code
.pheatmapColorPalette Source code
.plotCountsFacet Source code
.plotCountsWide Source code
.plotQCMetric Source code
.plotQCScatterplot Source code
.quantileBreaks Source code
.rgb Source code
.scaleCols Source code
.scaleMatrix Source code
.scaleRows Source code
acid_coord_flip Man page
acid_geom_abline Man page
acid_geom_bar Man page
acid_geom_label Man page
acid_geom_label_average Man page
acid_geom_label_repel Man page
acid_pretty_breaks Man page
acid_scale_y_continuous_nopad Man page
acid_theme_dark Man page
acid_theme_dracula Man page
acid_theme_light Man page
acidplots Man page
acidplots-package Man page
acidplotsTestsURL Man page
barcodeRanksPerSample Man page
barcodeRanksPerSample,SingleCellExperiment-method Man page
blueYellow Man page Source code
darkPalette Man page
defunct Man page
deprecated Man page
draculaPalette Man page
genderMarkers Man page
geoms Man page
gradient Man page Source code
iOSDarkPalette Man page
iOSLightPalette Man page
isDark Man page Source code
lightPalette Man page
macOSDarkPalette Man page
macOSLightPalette Man page
matchLabels Man page Source code
palettes Man page
plotBarcodeRanks Man page
plotBarcodeRanks,SingleCellExperiment-method Man page
plotCellCounts Man page
plotCellCounts,SingleCellExperiment-method Man page
plotCorrelationHeatmap Man page
plotCorrelationHeatmap,SingleCellExperiment-method Man page
plotCorrelationHeatmap,SummarizedExperiment-method Man page
plotCounts Man page
plotCounts,SummarizedExperiment-method Man page
plotCountsCorrelation Man page
plotCountsCorrelation,matrix,matrix-method Man page
plotCountsCorrelationHeatmap Man page
plotCountsCorrelationHeatmap,matrix,matrix-method Man page
plotCountsPerBiotype Man page
plotCountsPerBiotype,SingleCellExperiment-method Man page
plotCountsPerBiotype,SummarizedExperiment-method Man page
plotCountsPerBroadClass Man page
plotCountsPerBroadClass,SummarizedExperiment-method Man page
plotCountsPerCell Man page
plotCountsPerCell,SingleCellExperiment-method Man page
plotCountsPerFeature Man page
plotCountsPerFeature,SingleCellExperiment-method Man page
plotCountsPerFeature,SummarizedExperiment-method Man page
plotCountsPerGene Man page Source code
plotCountsVsFeatures Man page
plotCountsVsFeatures,SingleCellExperiment-method Man page
plotFeaturesDetected Man page
plotFeaturesDetected,SingleCellExperiment-method Man page
plotFeaturesDetected,SummarizedExperiment-method Man page
plotFeaturesPerCell Man page
plotFeaturesPerCell,SingleCellExperiment-method Man page
plotGenderMarkers Man page
plotGenderMarkers,SingleCellExperiment-method Man page
plotGenderMarkers,SummarizedExperiment-method Man page
plotGenesDetected Man page Source code
plotHeatmap Man page
plotHeatmap,SingleCellExperiment-method Man page
plotHeatmap,SummarizedExperiment-method Man page
plotMitoRatio Man page
plotMitoRatio,SingleCellExperiment-method Man page
plotMitoVsCoding Man page
plotMitoVsCoding,SingleCellExperiment-method Man page
plotNovelty Man page
plotNovelty,SingleCellExperiment-method Man page
plotPCA Man page
plotPCA,SummarizedExperiment-method Man page
plotQC Man page
plotQC,SingleCellExperiment-method Man page
plotQC,SummarizedExperiment-method Man page
plotQuantileHeatmap Man page
plotQuantileHeatmap,SingleCellExperiment-method Man page
plotQuantileHeatmap,SummarizedExperiment-method Man page
plotSums Man page
plotSums,Matrix-method Man page
plotSums,SummarizedExperiment-method Man page
plotSums,matrix-method Man page
plotTotalCounts Man page
plotTotalCounts,SingleCellExperiment-method Man page
plotTotalCounts,SummarizedExperiment-method Man page
plotUpset Man page
plotUpset,DataFrame-method Man page
plotUpset,data.frame-method Man page
plotZerosVsDepth Man page
plotZerosVsDepth,SummarizedExperiment-method Man page
purpleOrange Man page Source code
scale_color_synesthesia_c Man page
scale_color_synesthesia_d Man page
scale_colour_synesthesia_c Man page
scale_colour_synesthesia_d Man page
scale_fill_synesthesia_c Man page
scale_fill_synesthesia_d Man page
synesthesia Man page Source code
synesthesia_pal Man page
themes Man page
acidgenomics/minimalism documentation built on Jan. 8, 2020, 3:46 a.m.