plotGenderMarkers: Plot sexually dimorphic gender marker genes

In acidgenomics/minimalism: Acid Genomics Plot Functions and Themes

Plot sexually dimorphic gender marker genes

Description

This is a convenience function that quickly plots known sexually dimorphic genes, and overall gene experssion for the X and Y chromosomes.

Usage

plotGenderMarkers(object, ...)

## S4 method for signature 'SingleCellExperiment'
plotGenderMarkers(object, ...)

## S4 method for signature 'SummarizedExperiment'
plotGenderMarkers(object, style = "wide", ...)

Arguments

object	Object.
...	Passthrough to plotCounts(), with the genes argument automatically defined.
style	character(1). Plot style.

Value

ggplot.

Note

Currently only Homo sapiens and Mus musculus genomes are supported.

Updated 2022-03-07.

See Also

plotCounts().

Examples

data(
    RangedSummarizedExperiment,
    SingleCellExperiment_splatter,
    package = "AcidTest"
)

## SummarizedExperiment ====
object <- RangedSummarizedExperiment
try({
    plotGenderMarkers(object)
})

## SingleCellExperiment ====
object <- SingleCellExperiment_splatter
try({
    plotGenderMarkers(object)
})

acidgenomics/minimalism documentation built on April 1, 2024, 10:34 a.m.