plotKnownMarkers: Plot known markers

In acidgenomics/minimalism: Acid Genomics Plot Functions and Themes

Plot known markers

Description

Plot known markers

Usage

plotKnownMarkers(object, markers, ...)

## S4 method for signature 'SingleCellExperiment,KnownMarkers'
plotKnownMarkers(object, markers, reduction = "UMAP", headerLevel = 2L, ...)

Arguments

object	Object.
markers	Object.
reduction	vector(1). Dimension reduction name or index position.
headerLevel	integer(1) (1-7). Markdown header level.
...	Passthrough arguments to plotMarker().

Value

Show graphical output. Invisibly return a ggplot list.

Note

Updated 2023-08-17.

Examples

data(
    KnownMarkers,
    SingleCellExperiment_Seurat,
    package = "AcidTest"
)

## SingleCellExperiment ====
object <- SingleCellExperiment_Seurat
markers <- KnownMarkers
plotKnownMarkers(
    object = object,
    markers = markers,
    reduction = "UMAP"
)

acidgenomics/minimalism documentation built on April 1, 2024, 10:34 a.m.