plotNovelty: Plot novelty score

In acidgenomics/minimalism: Acid Genomics Plot Functions and Themes

Plot novelty score

Description

"Novelty" refers to log10 genes detected per count.

Usage

plotNovelty(object, ...)

## S4 method for signature 'SingleCellExperiment'
plotNovelty(
  object,
  geom = c("histogram", "ecdf", "violin", "ridgeline", "boxplot"),
  interestingGroups = NULL,
  min = 0L,
  trans = "identity",
  labels = list(title = "Novelty", subtitle = NULL, metricAxis = NULL, otherAxis = NULL)
)

Arguments

object	Object.
geom	character(1). Plot type. Uses match.arg() internally and defaults to the first argument in the character vector.
interestingGroups	character. Groups of interest to use for visualization. Corresponds to factors describing the columns of the object.
min	numeric(1). Recommended minimum value cutoff.
trans	character(1). Name of the axis scale transformation to apply. For more information: help(topic = "scale_x_continuous", package = "ggplot2")
labels	list. ggplot2 labels. See ggplot2::labs() for details.
...	Additional arguments.

Value

ggplot.

Note

Updated 2022-03-07.

Author(s)

Michael Steinbaugh

Examples

data(SingleCellExperiment_splatter, package = "AcidTest")

## SingleCellExperiment ====
object <- SingleCellExperiment_splatter
plotNovelty(object)

acidgenomics/minimalism documentation built on April 1, 2024, 10:34 a.m.