Files in acidgenomics/r-acidexperiment

Acid Genomics Summarized Experiment

.Rbuildignore

.gitignore

.lintr

DESCRIPTION

LICENSE

NAMESPACE

NEWS.md R/AllGenerics.R R/AllGlobals.R R/EnsemblToNcbi-methods.R R/GeneToSymbol-methods.R R/TxToGene-methods.R R/aggregate-methods.R R/as.SummarizedExperiment-methods.R R/autopadZeros-methods.R R/calculateMetrics-methods.R R/combine-methods.R R/convertGenesToSymbols-methods.R R/convertSampleIdsToNames-methods.R R/convertTranscriptsToGenes-methods.R R/correlation-methods.R R/counts-methods.R R/decode-methods.R R/detectLanes.R R/droplevels2-methods.R R/encode-methods.R R/estimateSizeFactors-methods.R R/export-methods.R R/geneNames-methods.R R/headtail-methods.R R/humanize-methods.R R/importSampleData.R R/integerCounts-methods.R R/interestingGroups-methods.R R/makeSampleData-methods.R R/makeSummarizedExperiment.R R/mapGenes-methods.R R/matchInterestingGroups.R R/matchSampleColumn-methods.R R/melt-methods.R R/metrics-methods.R R/microplate.R R/minimalSampleData.R R/nonzeroRowsAndCols-methods.R R/organism-methods.R R/package.R R/sampleData-methods.R R/sampleNames-methods.R R/sanitizeSampleData.R R/selectSamples-methods.R R/sizeFactors-methods.R R/stripGeneVersions-methods.R R/stripTranscriptVersions-methods.R R/syntactic-methods.R R/tpm-methods.R R/uniteInterestingGroups-methods.R README.md

_pkgdown.yml

man/AcidExperiment-package.Rd man/AcidExperimentTestsUrl.Rd man/EnsemblToNcbi.Rd man/GeneToSymbol.Rd man/TxToGene.Rd man/aggregate.Rd man/as.SummarizedExperiment.Rd man/autopadZeros.Rd man/calculateMetrics.Rd man/combine.Rd man/convertGenesToSymbols.Rd man/convertSampleIdsToNames.Rd man/convertTranscriptsToGenes.Rd man/correlation.Rd man/counts.Rd man/decode.Rd man/detectLanes.Rd man/droplevels2.Rd man/encode.Rd man/estimateSizeFactors.Rd man/export.Rd man/geneNames.Rd man/headtail.Rd man/humanize.Rd man/importSampleData.Rd man/integerCounts.Rd man/interestingGroups.Rd man/makeSampleData.Rd man/makeSummarizedExperiment.Rd man/mapGenes.Rd man/matchInterestingGroups.Rd man/matchSampleColumn.Rd man/melt.Rd man/metrics.Rd man/microplate.Rd man/minimalSampleData.Rd man/nonzeroRowsAndCols.Rd man/organism.Rd man/sampleData.Rd man/sampleNames.Rd man/sanitizeSampleData.Rd man/selectSamples.Rd man/sizeFactors.Rd man/stripGeneVersions.Rd man/stripTranscriptVersions.Rd man/syntactic.Rd man/tpm.Rd man/uniteInterestingGroups.Rd

package.Rproj

pkgdown/extra.css

tests/testthat.R

tests/testthat/.gitignore

tests/testthat/helper-cache.R tests/testthat/helper-globals.R tests/testthat/test-EnsemblToNcbi.R tests/testthat/test-GeneToSymbol.R tests/testthat/test-aggregate.R tests/testthat/test-autopadZeros.R tests/testthat/test-calculateMetrics.R tests/testthat/test-coerce.R tests/testthat/test-combine.R tests/testthat/test-convertGenesToSymbols.R tests/testthat/test-convertSampleIdsToNames.R tests/testthat/test-convertTranscriptsToGenes.R tests/testthat/test-correlation.R tests/testthat/test-counts.R tests/testthat/test-detectLanes.R tests/testthat/test-droplevels2.R tests/testthat/test-encode-decode.R tests/testthat/test-estimateSizeFactors.R tests/testthat/test-export.R tests/testthat/test-geneNames.R tests/testthat/test-headtail.R tests/testthat/test-humanize.R tests/testthat/test-importSampleData.R tests/testthat/test-integerCounts.R tests/testthat/test-interestingGroups.R tests/testthat/test-makeSampleData.R tests/testthat/test-makeSummarizedExperiment.R tests/testthat/test-mapGenes.R tests/testthat/test-matchInterestingGroups.R tests/testthat/test-matchSampleColumn.R tests/testthat/test-melt.R tests/testthat/test-metrics.R tests/testthat/test-microplate.R tests/testthat/test-minimalSampleData.R tests/testthat/test-organism.R tests/testthat/test-sampleData.R tests/testthat/test-sampleNames.R tests/testthat/test-sanitizeSampleData.R tests/testthat/test-selectSamples.R tests/testthat/test-syntactic.R tests/testthat/test-tpm.R tests/testthat/test-uniteInterestingGroups.R

todo.org

acidgenomics/r-acidexperiment documentation built on Jan. 17, 2024, 7:56 p.m.