humanize: Humanize an R object

In acidgenomics/r-acidexperiment: Acid Genomics Summarized Experiment

Humanize an R object

Description

Humanize an R object

Usage

humanize(object, ...)

## S4 method for signature 'SummarizedExperiment'
humanize(object)

Arguments

object	Object.
...	Additional arguments.

Details

This can make dimnames invalid (see make.names()) and should only be called prior to writing files to disk.

Value

Modified object. Contains human-friendly rownames (e.g. gene symbols instead of stable gene IDs) and colnames (e.g. sample names instead of sample IDs).

Note

Updated 2021-10-21.

Examples

data(RangedSummarizedExperiment, package = "AcidTest")

## SummarizedExperiment ====
object <- RangedSummarizedExperiment
lapply(dimnames(object), head)
x <- humanize(object)
lapply(dimnames(x), head)

acidgenomics/r-acidexperiment documentation built on Jan. 17, 2024, 7:56 p.m.