syntactic: Syntactic naming functions

In acidgenomics/r-acidexperiment: Acid Genomics Summarized Experiment

Syntactic naming functions

Description

Syntactic naming functions

Usage

camelCase(object, ...)

dottedCase(object, ...)

snakeCase(object, ...)

upperCamelCase(object, ...)

## S4 method for signature 'DFrame'
camelCase(
  object,
  rownames = FALSE,
  colnames = TRUE,
  mcols = TRUE,
  metadata = TRUE,
  strict = TRUE
)

## S4 method for signature 'Matrix'
camelCase(object, rownames = FALSE, colnames = TRUE, strict = TRUE)

## S4 method for signature 'Ranges'
camelCase(object, names = FALSE, mcols = TRUE, metadata = TRUE, strict = TRUE)

## S4 method for signature 'SummarizedExperiment'
camelCase(
  object,
  rownames = FALSE,
  colnames = TRUE,
  assayNames = TRUE,
  rowData = TRUE,
  colData = TRUE,
  metadata = TRUE,
  strict = TRUE
)

## S4 method for signature 'Vector'
camelCase(object, names = TRUE, mcols = TRUE, metadata = TRUE, strict = TRUE)

## S4 method for signature 'atomic'
camelCase(object, names = TRUE, strict = TRUE)

## S4 method for signature 'data.frame'
camelCase(object, rownames = FALSE, colnames = TRUE, strict = TRUE)

## S4 method for signature 'factor'
camelCase(object, names = TRUE, strict = TRUE)

## S4 method for signature 'list'
camelCase(object, names = TRUE, strict = TRUE)

## S4 method for signature 'matrix'
camelCase(object, rownames = FALSE, colnames = TRUE, strict = TRUE)

## S4 method for signature 'DFrame'
dottedCase(
  object,
  rownames = FALSE,
  colnames = TRUE,
  mcols = TRUE,
  metadata = TRUE
)

## S4 method for signature 'Matrix'
dottedCase(object, rownames = FALSE, colnames = TRUE)

## S4 method for signature 'Ranges'
dottedCase(object, names = FALSE, mcols = TRUE, metadata = TRUE)

## S4 method for signature 'SummarizedExperiment'
dottedCase(
  object,
  rownames = FALSE,
  colnames = TRUE,
  assayNames = TRUE,
  rowData = TRUE,
  colData = TRUE,
  metadata = TRUE
)

## S4 method for signature 'Vector'
dottedCase(object, names = TRUE, mcols = TRUE, metadata = TRUE)

## S4 method for signature 'atomic'
dottedCase(object, names = TRUE)

## S4 method for signature 'data.frame'
dottedCase(object, rownames = FALSE, colnames = TRUE)

## S4 method for signature 'factor'
dottedCase(object, names = TRUE)

## S4 method for signature 'list'
dottedCase(object, names = TRUE)

## S4 method for signature 'matrix'
dottedCase(object, rownames = FALSE, colnames = TRUE)

## S4 method for signature 'atomic'
snakeCase(object, names = TRUE)

## S4 method for signature 'data.frame'
snakeCase(object, rownames = FALSE, colnames = TRUE)

## S4 method for signature 'factor'
snakeCase(object, names = TRUE)

## S4 method for signature 'list'
snakeCase(object, names = TRUE)

## S4 method for signature 'matrix'
snakeCase(object, rownames = FALSE, colnames = TRUE)

## S4 method for signature 'DFrame'
snakeCase(
  object,
  rownames = FALSE,
  colnames = TRUE,
  mcols = TRUE,
  metadata = TRUE
)

## S4 method for signature 'Matrix'
snakeCase(object, rownames = FALSE, colnames = TRUE)

## S4 method for signature 'Ranges'
snakeCase(object, names = FALSE, mcols = TRUE, metadata = TRUE)

## S4 method for signature 'SummarizedExperiment'
snakeCase(
  object,
  rownames = FALSE,
  colnames = TRUE,
  assayNames = TRUE,
  rowData = TRUE,
  colData = TRUE,
  metadata = TRUE
)

## S4 method for signature 'Vector'
snakeCase(object, names = TRUE, mcols = TRUE, metadata = TRUE)

## S4 method for signature 'DFrame'
upperCamelCase(
  object,
  rownames = FALSE,
  colnames = TRUE,
  mcols = TRUE,
  metadata = TRUE,
  strict = TRUE
)

## S4 method for signature 'Matrix'
upperCamelCase(object, rownames = FALSE, colnames = TRUE, strict = TRUE)

## S4 method for signature 'Ranges'
upperCamelCase(
  object,
  names = FALSE,
  mcols = TRUE,
  metadata = TRUE,
  strict = TRUE
)

## S4 method for signature 'SummarizedExperiment'
upperCamelCase(
  object,
  rownames = FALSE,
  colnames = TRUE,
  assayNames = TRUE,
  rowData = TRUE,
  colData = TRUE,
  metadata = TRUE,
  strict = TRUE
)

## S4 method for signature 'Vector'
upperCamelCase(
  object,
  names = TRUE,
  mcols = TRUE,
  metadata = TRUE,
  strict = TRUE
)

## S4 method for signature 'atomic'
upperCamelCase(object, names = TRUE, strict = TRUE)

## S4 method for signature 'data.frame'
upperCamelCase(object, rownames = FALSE, colnames = TRUE, strict = TRUE)

## S4 method for signature 'factor'
upperCamelCase(object, names = TRUE, strict = TRUE)

## S4 method for signature 'list'
upperCamelCase(object, names = TRUE, strict = TRUE)

## S4 method for signature 'matrix'
upperCamelCase(object, rownames = FALSE, colnames = TRUE, strict = TRUE)

Arguments

object	Object.
rownames	logical(1). Apply sanitization on row names. This is not generally recommended by default, since rownames commonly contain gene identifiers that should not be modified.
colnames	logical(1). Apply to column names.
mcols	logical(1). Sanitize names of metadata columns.
metadata	logical(1). Sanitize metadata names.
strict	logical(1). Enforce strict name sanitization. When TRUE, this does not allow the return of any capitalized acronyms. "RNA" will become "Rna", for example.
names	logical(1). Sanitize names. Only applies to string mode (rename = FALSE).
assayNames	logical(1). Sanitize assay names.
rowData	logical(1). Sanitize the row data names.
colData	logical(1). Sanitize column names of column data.
...	Additional arguments.

Note

Updated 2023-04-27.

Examples

data(syntactic, package = "AcidTest")
lapply(syntactic, camelCase)

acidgenomics/r-acidexperiment documentation built on Jan. 17, 2024, 7:56 p.m.