integerCounts: Integer counts

In acidgenomics/r-acidexperiment: Acid Genomics Summarized Experiment

Integer counts

Description

Integer counts

Usage

integerCounts(object, ...)

## S4 method for signature 'Matrix'
integerCounts(object)

## S4 method for signature 'SummarizedExperiment'
integerCounts(object, assay = "counts")

## S4 method for signature 'matrix'
integerCounts(object)

Arguments

object	Object.
assay	vector(1). Assay name or index position.
...	Additional arguments.

Value

Matrix. Typically matrix or Matrix class.

Note

Updated 2021-09-11.

For a SummarizedExperiment object, "counts" must be explicitly defined in assayNames.

Examples

data(RangedSummarizedExperiment, package = "AcidTest")

## SummarizedExperiment ====
object <- RangedSummarizedExperiment
x <- integerCounts(object)
class(x)
is.integer(x)
summary(x)

acidgenomics/r-acidexperiment documentation built on Jan. 17, 2024, 7:56 p.m.