lndscp_contour_ggplot: Plot an ablandscape contour plot

In acorg/ablandscapes: Making Antibody landscapes Using R

Plot an ablandscape contour plot

Description

Plot a contour plot from an antibody landscape fit using 'ggplot2' and [ggplot2::geom_contour_filled()].

Usage

lndscp_contour_ggplot(
  fit,
  xlim = NULL,
  ylim = NULL,
  crop2chull = TRUE,
  padding = 1,
  grid_x = NULL,
  grid_y = NULL,
  grid_spacing = 0.5,
  show.grid = TRUE,
  grid.color = "grey90",
  grid.linewidth = 0.5,
  ...
)

Arguments

fit	The antibody landscape fit object, created using [ablandscape.fit()]
xlim	x limits for the plot
ylim	y limits for the plot
crop2chull	Crop the plot to the convex hull defined by the antigens titrated
padding	Padding to apply to the fit
grid_x	x grid points at which the ablandscapes fit should be calculated (passed to [predict_lndscp_grid()])
grid_y	y grid points at which the ablandscapes fit should be calculated (passed to [predict_lndscp_grid()])
grid_spacing	grid spacing for the ablandscapes fit (passed to [predict_lndscp_grid()])
show.grid	Show grid lines behind contours
grid.color	Grid line colors when shown
grid.linewidth	Grid line width when shown
...	Additional arguments passed to [ggplot2::geom_contour_filled()]

Value

Returns the ggplot object for the contour plot

acorg/ablandscapes documentation built on March 4, 2024, 7:50 a.m.