predict.ablandscape.fit: Predict method for antibody landscapes

In acorg/ablandscapes: Making Antibody landscapes Using R

Predict method for antibody landscapes

Description

Produce predicted values based on a antibody landscapes fit object.

Usage

## S3 method for class 'ablandscape.fit'
predict(
  object,
  coords,
  interval = "none",
  level = 0.95,
  negll.fit = FALSE,
  crop2chull = TRUE,
  control = list()
)

Arguments

object	The antibody landscapes fit object
coords	Antigenic coordinates for which to predict landscapes heights
interval	Type of interval calculation, (one of "none" or "confidence")

Value

Produces a vector of predictions or a matrix of predictions and bounds with column names fit, lwr, and upr if interval is set.

acorg/ablandscapes documentation built on March 4, 2024, 7:50 a.m.