Man pages for adamlilith/enmSdm
Tools for modeling niches and distributions of species

aucWeightedCalculate weighted AUC
compareNichesMetrics of niche overlap
compareResponseCompare two response curves along one or more predictors
contBoyceCalculate the Continuous Boyce Index (CBI) with weighting
contBoyce2xCalculate the Continuous Boyce Index (CBI) with weighting...
convertTropicosCoordsConvert coordinates from TROPICOS records to decimal degrees
coordPrecisionCalculate the precision of a geographic coordinate
dmsToDecimalConvert geographic coordinates in degrees-minutes-second to...
dot-calcTolAutomatically calculate tolerance for null model point...
dot-randPointsReturnReturn output common to "randPointsRespecting~" functions
dot-sampleRastSubregionSelect random points from a portion of a raster
elimCellDupsThin spatial points so that no more than one point falls...
FpbCalculate the Fpb measure of model accuracy across multiple...
FpbOneThresholdCalculate the Fpb measure of model accuracy for a single...
geoFoldAssign geographically-distinct k-folds
geoThinThin geographic points (mostly) deterministically
geoThinApproxThin geographic points stochastically
getCRSReturn a "proj4" string for a datum and projection
longLatRastersGenerate rasters with cell values equal to cell longitude or...
makeLarsDataAdd columns to a data matrix to represent polynomial and...
mopIdentify similar points in two sets using mobility-oriented...
nicheOverlapCalculate niche overlap as per Broennimann et al. (2012)
pointDistCalculate distance matrix between geographic points
predictEnmSdmGeneric predict function for LMs, GLMs, GAMs, RFs, BRTs,...
predictLarsPredict using Least Angle Regression (LARS) model
predictMaxEntPredict a MaxEnt model object (with optional feature-level...
randPointsBatchIterate "randPointsRespecting..." functions.
randPointsBatchExtractUpdates a list of random points with environmental data from...
randPointsBatchNicheOverlapNiche overlap for a set of iterated "randPointsRespecting~"...
randPointsBatchSampledReturns collated set of sampled sites from a set of...
randPointsRespectingSelfRandomizes geographic points while observing spatial...
randPointsRespectingSelfOther1Randomizes the location of two sets of geographic points...
randPointsRespectingSelfOther2Randomizes the location of two sets of geographic points...
sampleRastSample random points from a raster with/out replacement
sampleRastStratSample random points in a stratfied manner from a raster...
trainBrtCalibrate a boosted regresion tree (generalied boosting...
trainCrfCalibrate a conditional random forest model
trainGamCalibrate a generalized additive model (GAM)
trainGlmCalibrate a generalized linear model (GLM)
trainGlmDredgeCalibrate a generalized linear model (GLM)
trainLarsCalibrate a least angle regression (LARS) model
trainMaxEntCalibrate a Maxent (ver 3.3.3- or "maxent") model using AICc
trainMaxNetCalibrate a Maxent (ver 3.4.0+ or "maxnet") model using AICc
trainNsCalibrate a natural splines model
trainRfCalibrate a random forest model
xToCoordsExtract geographic coordinates from data frame, matrix, or...
adamlilith/enmSdm documentation built on Dec. 8, 2018, 10:15 a.m.