BetaUniformModel-class | Object representation of a beta-uniform model fit to a... |
betaUniformPvalueSumTest | A meta-analysis P-value summarising a set of hypotheses |
betaUniformScore | For each P-value, compute the log likelihood ratio of... |
bioplanetPathwaysDT | Bioplanet - catalogue of biological pathways |
cas9OCT4_hsZygote_diffexDT | Differential expression from RNAseq assay of OCT4(POU5F1)... |
constructHyperexponentialSumTransitionMatrix | Model a sum of log-transformed beta-uniform mixture draws as... |
convertFromBUM | A simple adapter from the class produced by BioNet |
dbetauniform | Density function for Beta-uniform Model |
erlotinib_adrHCC827_diffexDT | Microarray assay to understand acquired drug resistance to... |
falseNegativeFraction | False negative rate from M&P: B table 1 and equation 5 |
falsePositiveFraction | FALSE positive rate from M&P: C table 1 and equation 5 |
FDRestimate | False discovery rate - of BH fame. Equation 6 from M&P |
fishersPvalueSumTest | Combine multiple independent P-values together using Fisher's... |
fitBetaUniformMixtureDistribution | Fit a Beta-Uniform decomposition model to the provided... |
hsPathBankProteinSets_DT | Pathbank - catalogue of biological pathways |
koATF3_HCT116_diffexDT | Differential expression from microarray assay of ATF3... |
metaDEG | meta differential gene expression (DEG) analysis |
metaDEGth | metaDEGth: an enrichment analysis method for differential... |
metaDEGth-package | Combining differential expression P-values in a statistically... |
noiseFractionUpperBound | Upper bound on the the noise component of mixture... |
plot.BetaUniformModel | Plot summary for fitted Beta-Uniform models |
pValueThresholdAtConfidence | pValueThreshold estimate - estimates a threshdold such that... |
qbetauniform | Quantile function for Beta-uniform model |
rbetauniform | Random draw function for Beta-uniform model |
show-BetaUniformModel-method | Simple summary printer for a beta-uniform fit |
siTAZdiffex_HFL1_diffexDT | Differential expression from RNAseq assay of TAZ siRNA... |
trueNegativeFraction | True negative rate from M&P: D table 1 and equation 5 |
truePositiveFraction | True positive rate from M&P: A in table 1 and equation 5 |
TTRUST_TF2targets_DT | A Manually Curated Dataset Of Human Transcription Factor -... |
uniformComponentBound | Upper bound on Uniform component of Beta-uniform model |
WZ4002_adrH1975_diffexDT | Microarray assay studying aberrant MAPK1/ERK signaling,... |
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