falsePositiveFraction: FALSE positive rate from M&P: C table 1 and equation 5

In adamsardar/metaDEGth: Combining differential expression P-values in a statistically consistent fashion whilst respecting background signal/noise trends

FALSE positive rate from M&P: C table 1 and equation 5

Description

FALSE positive rate from M&P: C table 1 and equation 5

Usage

falsePositiveFraction(obj, pValueThreshold)

## S4 method for signature 'BetaUniformModel,ScalarNumeric'
falsePositiveFraction(obj, pValueThreshold)

## S4 method for signature 'ANY,missing'
falsePositiveFraction(obj, pValueThreshold)

## S4 method for signature 'ANY,numeric'
falsePositiveFraction(obj, pValueThreshold)

Arguments

obj	data object
pValueThreshold	p-value threshold

Functions

• falsePositiveFraction,BetaUniformModel,ScalarNumeric-method: method for dispatch

• falsePositiveFraction,ANY,missing-method: compute false positive rate using a threshold of 0.05

• falsePositiveFraction,ANY,numeric-method: compute false positive rate using threshold defined by the user, numeric

adamsardar/metaDEGth documentation built on Sept. 28, 2022, 10:12 p.m.