Files in adamsardar/metaDEGth
Combining differential expression P-values in a statistically consistent fashion whilst respecting background signal/noise trends
.Rbuildignore
.github/.gitignore
.github/workflows/check-standard.yaml
.github/workflows/lint.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
NAMESPACE
R/BetaUniformModel_S4Class.R
R/Pvalues_S4Class.R
R/TTRUST_TFtarget_relationships.R
R/WZ4002_adrH1975_diffexDT.R
R/betaUniformPvalueSumTest.R
R/betaUniformScore.R
R/bioplanetPathwaysDT.R
R/cas9OCT4_hsZygote_diffexDT.R
R/erlotinib_adrHCC827_diffexDT.R
R/fishersPvalueSumTest.R
R/fitBetaUniformModel.R
R/hsPathBankProteinSets_DT.R
R/koATF3_HCT116_diffexDT.R
R/metaDEG.R
R/metaDEGth-package.R
R/plot.BetaUniformModel.R
R/siTAZdiffex_HFL1_diffexDT.R
R/validators.R
README.md
analysis/OCT4ko_enrichmentAnalysis.Rmd
analysis/README.md
analysis/WZ4002_enrichmentAnalysis.Rmd
analysis/siTAZknockdown_enrichmentAnalysis.Rmd
codecov.yml
data-raw/ATF3knockout_HCT116CellLine.Rmd
data-raw/OCT4knockout_humanCellLine.Rmd
data-raw/TF_siRNA_knockdowns_GSE50588_summary.R
data-raw/TTRUST_TFtarget_relationships.Rmd
data-raw/WZ4002ADR_NCIH1975.Rmd
data-raw/eroltinibADR_HCC827.Rmd
data-raw/exploringExpM.Rmd
data-raw/extractRegulonsFromGSE50588.Rmd
data-raw/gefitinibADR_PC9.Rmd
data-raw/pathbank_datasource.Rmd
data-raw/prepareBioPlanetPathways.Rmd
data-raw/siRNA_TAZknockdown_fibroblastCellLine.Rmd
data-raw/testingAgainstNull.Rmd
data/TTRUST_TF2targets_DT.RData
data/WZ4002_adrH1975_diffexDT.RData
data/bioplanetPathwaysDT.RData
data/cas9OCT4_hsZygote_diffexDT.RData
data/erlotinib_adrHCC827_diffexDT.RData
data/hsPathBankProteinSets_DT.RData
data/koATF3_HCT116_diffexDT.RData
data/siTAZdiffex_HFL1_diffexDT.RData
man/BetaUniformModel-class.Rd
man/FDRestimate.Rd
man/TTRUST_TF2targets_DT.Rd
man/WZ4002_adrH1975_diffexDT.Rd
man/betaUniformPvalueSumTest.Rd
man/betaUniformScore.Rd
man/bioplanetPathwaysDT.Rd
man/cas9OCT4_hsZygote_diffexDT.Rd
man/constructHyperexponentialSumTransitionMatrix.Rd
man/convertFromBUM.Rd
man/dbetauniform.Rd
man/erlotinib_adrHCC827_diffexDT.Rd
man/falseNegativeFraction.Rd
man/falsePositiveFraction.Rd
man/fishersPvalueSumTest.Rd
man/fitBetaUniformMixtureDistribution.Rd
man/hsPathBankProteinSets_DT.Rd
man/koATF3_HCT116_diffexDT.Rd
man/metaDEG.Rd
man/metaDEGth-package.Rd
man/metaDEGth.Rd
man/noiseFractionUpperBound.Rd
man/pValueThresholdAtConfidence.Rd
man/plot.BetaUniformModel.Rd
man/qbetauniform.Rd
man/rbetauniform.Rd
man/show-BetaUniformModel-method.Rd
man/siTAZdiffex_HFL1_diffexDT.Rd
man/trueNegativeFraction.Rd
man/truePositiveFraction.Rd
man/uniformComponentBound.Rd
tests/testthat.R
tests/testthat/test-BetaUniformModelClass.R
tests/testthat/test-BetaUniformPvalueSum.R
tests/testthat/test-BetaUniformScore.R
tests/testthat/test-FisherPvalueSum.R
tests/testthat/test-fitBetaUniformParameters.R
