trueNegativeFraction: True negative rate from M&P: D table 1 and equation 5

In adamsardar/metaDEGth: Combining differential expression P-values in a statistically consistent fashion whilst respecting background signal/noise trends

True negative rate from M&P: D table 1 and equation 5

Description

True negative rate from M&P: D table 1 and equation 5

Usage

trueNegativeFraction(obj, pValueThreshold)

## S4 method for signature 'BetaUniformModel,ScalarNumeric'
trueNegativeFraction(obj, pValueThreshold)

## S4 method for signature 'ANY,missing'
trueNegativeFraction(obj, pValueThreshold)

## S4 method for signature 'ANY,numeric'
trueNegativeFraction(obj, pValueThreshold)

Arguments

obj	data object
pValueThreshold	p-value threshold

Functions

• trueNegativeFraction,BetaUniformModel,ScalarNumeric-method: method for dispatch

• trueNegativeFraction,ANY,missing-method: compute true negative rate using a threshold of 0.05

• trueNegativeFraction,ANY,numeric-method: compute true negative rate using numeric threshold defined by the user

adamsardar/metaDEGth documentation built on Sept. 28, 2022, 10:12 p.m.