Files in adelabriere/proFIA
Preprocessing of FIA-HRMS data
.BBSoptions
.gitignore
DESCRIPTION
NAMESPACE
NEWS
R/Denoising.R
R/KNN_T.R
R/cWrapper.R
R/classContainer.R
R/fastMatchPpm.R
R/findPeaksFIA.R
R/methodsContainer.R
R/noiseEstimator.R
R/proFIA-package.R
inst/CITATION
inst/NEWS
inst/unitTests/test_proFIA.R
man/acquisitionDirectory.Rd
man/analyzeAcquisitionFIA.Rd
man/determiningInjectionZone.Rd
man/determiningSizePeak.Geom.Rd
man/estimateNoiseMS.Rd
man/exportDataMatrix-proFIAset-method.Rd
man/exportExpressionSet-proFIAset-method.Rd
man/exportPeakTable-proFIAset-method.Rd
man/exportSampleMetadata-proFIAset-method.Rd
man/exportVariableMetadata-proFIAset-method.Rd
man/findBandsFIA.Rd
man/findFIASignal.Rd
man/findMzGroup-proFIAset-method.Rd
man/getInjectionPeak.Rd
man/group.FIA-proFIAset-method.Rd
man/impute.FIA-proFIAset-method.Rd
man/impute.KNN_TN-proFIAset-method.Rd
man/impute.randomForest-proFIAset-method.Rd
man/makeDataMatrix-proFIAset-method.Rd
man/noiseEstimation-class.Rd
man/peaksGroup-proFIAset-method.Rd
man/plot.Rd
man/plotFlowgrams-proFIAset-method.Rd
man/plotNoise.Rd
man/plotRaw-proFIAset-method.Rd
man/plotSamplePeaks-proFIAset-method.Rd
man/proFIA-package.Rd
man/proFIAset-class.Rd
man/proFIAset.Rd
src/FIABandsExtractionCentroid.c
src/UtilFunc.c
src/UtilFunc.h
src/fastMatchPpm.c
tests/runTests.R
vignettes/group_good_parameters.png
vignettes/group_wrong_parameters.png
vignettes/proFIA-vignette.Rmd
vignettes/proFIA-vignette.bib
vignettes/proFIA_cheat_sheet.png
vignettes/workflow_info.png
