exportPeakTable-proFIAset-method: Export proFIAset as a peak table.
In adelabriere/proFIA: Preprocessing of FIA-HRMS data

Description Usage Arguments Value Examples

Export the data from a proFIAset object as a peak table which containes the values of measured for each variables for each samples and supplementary information.

## S4 method for signature 'proFIAset'
exportPeakTable(object, colgroup = c("mzMed",
  "corSampPeakMean", "meanSolvent", "signalOverSolventRatioMean", "timeShifted",
  "signalOverSolventPvalueMean"), mval = c("NA", "zero"), filename = NULL)

`object`	A proFIAset object.
`colgroup`	Labels corresponding to the column names of the group table which will be added to the peak table.
`mval`	How will missing values be treated, in default they will be set to NA, or you can keep 0.
`filename`	The name of the file for the peak table to be exported.

A dataframe containg the datasets.

if(require("plasFIA")){
    data(plasSet)

    #Creating the peak table
    ptable<-exportPeakTable(plasSet)
    head(ptable)

    #Directly in a file
    ## Not run: ptable<-exportPeakTable(plasSet,filename="peak_table.tsv")
}