Man pages for adibender/rFtools
Tools for the analysis of Random Forests (and cforest)
| barplot.LevelsVsLayerByMAF | barplot of category frequencies separated by MAF |
| getAncestryForest | retrieves the path from node to root for all (not terminal)... |
| getAncestryNode | retrieves path from node to root |
| getAncestryTree | retrieves the path from node to root for all nodes of a tree |
| getCategoryFrequenciesForest | retrieves category frequency information of a forest |
| getCategoryFrequenciesNode | retrieves the category frequencies for one node |
| getCategoryFrequenciesTree | retrieves category frequencies for one tree |
| getLayerForest | retrieves the layer of (not terminal) nodes |
| getLayerTree | retrieves the layer for all nodes of a tree |
| getLevelsOfSplitVariablesForest | returns the number of different categories |
| getMAFofSplitVariablesForest | returns the minor allel frequency of the split variables |
| getMAFofSplitVariablesTree | returns minor allele frequencies |
| getSplitInformationForest | returns split information on forest |
| getSplitInformationTree | get split information for all not terminal nodes in tree |
| getSplitVariablesForest | retrieves split variables from forest |
| getSplitVariablesTree | extract split variables from tree |
| plot.LevelsVsLayer | visualization of levels per layer |
| plot.LevelsVsLayerByMAF | plot levels per layer and minor allel frequency |
| plot.LevelsVsLayerCFbyMAF | plot levels per layer and MAF for conditional forests |
| plot.SplitVarsByLayerAndMAF | visualize category frequencies of split variable |
| rFtools-package | Tools for the (meta-) analysis of Random Forests |
| simulateAndSafe | wraper to create all objects needed for the further (meta-)... |
| simulateAndTable | simulate and table information in one step |
| simulateSNPdata | simulate SNP data |
| tableLevelsVsLayer | tables levels vs. layer |
| tableLevelsVsLayerByMAF | table category frequency information by MAF |
| tableLevelsVsLayerCFbyMAF | table cforest category frequency information by MAF |
| tableSplitVarLevelsVsLayer | table category frequency information for split variables |
| tableSplitVarLevelsVsLayerByMAF | table category frequencies per layer and MAF |
| tableSplitVarsByLayerAndMAF | table category frequency information stratified by layer and... |
