Files in adw96/DivNet
Diversity Estimation in Networked Ecological Communities
.Rbuildignore
.gitattributes
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
NAMESPACE
R/DivNet.R
R/MCmat.R
R/MCrow.R
R/beta_diversity_helper.R
R/conversions.R
R/data.R
R/divnet_alpha_estimates.R
R/divnet_main.R
R/estimands.R
R/estimate_diversity.R
R/fit_aitchison.R
R/s3functions.R
R/simulate.R
R/utility.R
README.Rmd
README.md
data/B2.RData
data/B2_phyloseq.RData
data/Lee.rda
docs/divnet-logo.png
docs/logo.png
man/B2.Rd
man/B2_phyloseq.Rd
man/DivNet-package.Rd
man/Lee.Rd
man/MCmat.Rd
man/MCrow.Rd
man/OLS.Rd
man/acomb3.Rd
man/bc_fast.Rd
man/bray_curtis_true.Rd
man/divnet.Rd
man/euc_fast.Rd
man/euclidean_true.Rd
man/fit_aitchison.Rd
man/make_alpha_estimates.Rd
man/make_w.Rd
man/pick_base.Rd
man/plot.diversityEstimates.Rd
man/print.diversityEstimates.Rd
man/shannon_true.Rd
man/simplifyBeta.Rd
man/simpson_true.Rd
man/stars.Rd
man/testBetaDiversity.Rd
man/testDiversity.Rd
man/to_composition_matrix.Rd
man/to_log_ratios.Rd
tests/testthat.R
tests/testthat/t1.txt
tests/testthat/t2.txt
tests/testthat/test-alpha_estimates.R
tests/testthat/test-simulate.R
tests/testthat/test_beta_diversity_helper.R
tests/testthat/test_conversions.R
tests/testthat/test_core_functionality.R
tests/testthat/test_correct.R
tests/testthat/test_formula.R
tests/testthat/test_networks.R
tests/testthat/test_parallel.R
tests/testthat/test_phyloseq.R
tests/testthat/test_s3.R
tests/testthat/test_unifrac.R
tests/testthat/test_utilities.R
tests/testthat/test_variances.R
tests/testthat/test_zeros.R
vignettes/README.md
vignettes/assessing-model-fit.Rmd
vignettes/beta_diversity.Rmd
vignettes/centroids.Rmd
vignettes/getting-started.Rmd
