annotateRegions: annotateRegions
In aertslab/cisTopic: cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data
annotateRegions R Documentation
annotateRegions
Description
Add peak annotation to the regions (e.g. type of region, closest gene, ...)
Usage
annotateRegions(object, txdb, annoDb, ...)
Arguments
object
Initialized cisTopic object.
txdb
TxDb object matching the genome used for mapping
annoDb
Annotation package matchng the organism of origin
...
See annotatePeak from ChIPseeker
Details
See SignaturesHeatmap for estimating the region types per topic.
Value
Peak annotation is added as new columns to object@region.data
aertslab/cisTopic documentation built on April 6, 2024, 9:31 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
| annotateRegions | R Documentation |
annotateRegions
Description
Add peak annotation to the regions (e.g. type of region, closest gene, ...)
Usage
annotateRegions(object, txdb, annoDb, ...)
Arguments
object |
Initialized cisTopic object. |
txdb |
TxDb object matching the genome used for mapping |
annoDb |
Annotation package matchng the organism of origin |
... |
See annotatePeak from ChIPseeker |
Details
See SignaturesHeatmap for estimating the region types per topic.
Value
Peak annotation is added as new columns to object@region.data
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.