View source: R/OverlapcisTopic.R
getSignaturesRegions | R Documentation |
Get peaks found in region signatures given as a bed files and/or dataframes
getSignaturesRegions(object, signatures, labels, minOverlap = 0.4, ...)
object |
Initialized cisTopic object. |
labels |
A character vector with the names to be given to the signatures (in the same order as the signature paths or named) |
minOverlap |
Minimum overlap between the regions to consider them as overlapping regions |
... |
See |
signature |
Path to bed file or data frame containing signature regions (or a vector) |
The regions from the dataset that overlap with the signature are returned as a slot to object@signatures
regions <- c('regions_1.bed', 'regions_2.bed', 'regions_3.bed')
cisTopicObject <- getSignaturesRegions(cisTopicObject, regions)
cisTopicObject
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