binarizedcisTopicsToCtx | R Documentation |
Convert binarized cisTopics to the corresponding cisTarget coordinates
binarizedcisTopicsToCtx(object, genome, liftOver = NULL, minOverlap = 0.4, ...)
object |
Initialized cisTopic object, after the object@binarized.cisTopics has been filled. |
genome |
Genome to which the data has been mapped. If you are using liftOver, provide the genome to which you data has been lift-overed. The available genomes are hg19, dm3, dm6 and mm9. |
liftOver |
GRangesList object containing the original coordinates (in the same format as object@region.names) in the data set as slot names and the corresponding mapping regions as a GRanges object in the slot. |
... |
See |
Returns the cisTarget regions that correspond to the binarized topics in object@binarized.regions.to.Rct
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.