scoredRegionsToCtx: scoredRegionsToCtx

In aertslab/cisTopic: cisTopic: Probabilistic modelling of cis-regulatory topics from single cell epigenomics data

scoredRegionsToCtx

Description

Map regions to the most overlapping cisTarget region

Usage

scoredRegionsToCtx(object, genome, liftOver = NULL, minOverlap = 0.4, ...)

Arguments

object	Initialized cisTopic object, after the [e-mail] has been filled.
genome	Genome to which the data has been mapped. The available genomes are hg19, dm3, dm6 and mm9.
liftOver	GRangesList object containing the original coordinates (in the same format as [e-mail]) in the data set as slot names and the corresponding mapping regions as a GRanges object in the slot.
...	See findOverlap from GenomicRanges

Value

Returns the region scores per topic in [e-mail]

aertslab/cisTopic documentation built on April 6, 2024, 9:31 p.m.