aiminy/ModifiedDOSE: Disease Ontology Semantic and Enrichment analysis
This package implements five methods proposed by Resnik, Schlicker, Jiang, Lin and Wang respectively for measuring semantic similarities among DO terms and gene products. Enrichment analyses including hypergeometric model and gene set enrichment analysis are also implemented for discovering disease associations of high-throughput biological data.
Getting started
Browse package contents
Package details |
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| Author | Guangchuang Yu <guangchuangyu@gmail.com> with contributions from Li-Gen Wang, Vladislav Petyuk and Giovanni Dall'Olio. |
| Bioconductor views | Annotation GeneSetEnrichment MultipleComparison Pathways Software Visualization |
| Maintainer | Guangchuang Yu <guangchuangyu@gmail.com> |
| License | Artistic-2.0 |
| Version | 3.1.0 |
| URL | https://guangchuangyu.github.io/DOSE |
| Package repository | View on GitHub |
| Installation |
Install the latest version of this package by entering the following in R:
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