clusterSim: clusterSim
In aiminy/ModifiedDOSE: Disease Ontology Semantic and Enrichment analysis

Description Usage Arguments Details Value Author(s) Examples

semantic similarity between two gene clusters

1	clusterSim(cluster1, cluster2, measure = "Wang", combine = "BMA")

`cluster1`	a vector of gene IDs
`cluster2`	another vector of gene IDs
`measure`	One of "Resnik", "Lin", "Rel", "Jiang" and "Wang" methods.
`combine`	One of "max", "average", "rcmax", "BMA" methods, for combining

given two gene clusters, this function calculates semantic similarity between them.

similarity

Yu Guangchuang

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## cluster1 <- c("835", "5261","241", "994")
## cluster2 <- c("307", "308", "317", "321", "506", "540", "378", "388", "396")
## clusterSim(cluster1, cluster2, ont="MF", organism="human", measure="Wang")

aiminy/ModifiedDOSE documentation built on May 10, 2019, 7:36 a.m.