Man pages for aiminy/ModifiedDOSE
Disease Ontology Semantic and Enrichment analysis
| barplot.enrichResult | barplot |
| clusterSim | clusterSim |
| cnetplot_internal | cnetplot_internal |
| cnetplot-methods | cnetplot method |
| computeIC | compute information content |
| DataSet | Datasets |
| DOSE-package | Disease Ontology Semantic and Enrichment analysis Implemented... |
| doSim | doSim |
| dotplot-methods | dotplot method |
| enrichDGN | Enrichment analysis based on the DisGeNET (<URL:... |
| enrichDGNv | enrichDGN |
| enrichDO | DO Enrichment Analysis |
| enricher_internal | enrich.internal |
| enrichMap | enrichMap |
| enrichNCG | enrichNCG |
| enrichResult-class | Class "enrichResult" This class represents the result of... |
| EXTID2NAME | EXTID2NAME |
| fortify.enrichResult | fortify |
| fortify.gseaResult | fortify.gseaResult |
| gene2DO | convert Gene ID to DO Terms |
| geneID | geneID generic |
| geneInCategory | geneInCategory generic |
| geneSim | geneSim |
| GSEA_internal | GSEA_internal |
| gseaplot | visualize analyzing result of GSEA |
| gseaResult-class | Class "gseaResult" This class represents the result of GSEA... |
| gseDGN | DisGeNET Gene Set Enrichment Analysis |
| gseDO | DO Gene Set Enrichment Analysis |
| gseNCG | NCG Gene Set Enrichment Analysis |
| gsfilter | gsfilter |
| list2graph | convert gene IDs to igraph object |
| mclusterSim | mclusterSim |
| netplot | netplot |
| plot-methods | plot method |
| rebuildAnnoData | rebuiding annotation data |
| scaleNodeColor | scaleNodeColor |
| setReadable | setReadable |
| setting.graph.attributes | setting.graph.attributes |
| show-methods | show method |
| simplot | simplot |
| summary-methods | summary method |
| theme_dose | theme_dose |
| upsetplot-methods | upsetplot method |
