#' getExperimentSampleAssayData - Gets assay data for an experiment sample.
#'
#' \code{getExperimentSampleAssayData } Gets assay data for a experiment sample identified by barcode.
#'
#' @param coreApi coreApi object with valid jsessionid
#' @param experimentAssayType assay type to get
#' @param experimentSampleBarcode experiment sample barcode of entity to get
#' @param fullMetadata - get full metadata, default is FALSE
#' @param useVerbose TRUE or FALSE to indicate if verbose options should be used in http
#' @return returns a list $entity contains entity information, $response contains the entire http response
#' @export
#' @examples
#' \dontrun{
#' api <- coreAPI("PATH TO JSON FILE")
#' login <- authBasic(api)
#' experiment <- getExperimentSampleAssayData(login$coreApi, "experimentAssayType", "experimentSampleBarcode")
#' logOut(login$coreApi)
#' }
#' @author Craig Parman info@ngsanalytics.com
#' @author Natasha Mora natasha.mora@thermofisher.com
#' @description \code{ getExperimentSampleAssayData } Gets assay data for a experiment sample identified by barcode.
getExperimentSampleAssayData <-
function(coreApi,
experimentAssayType,
experimentSampleBarcode,
fullMetadata = FALSE,
useVerbose = FALSE) {
# clean the name for ODATA
resource <- odataCleanName("EXPERIMENT_SAMPLE")
experimentAssayType <- odataCleanName(experimentAssayType)
query <- paste0(
"('",
experimentSampleBarcode,
"')/ASSAY_DATA/pfs.",
experimentAssayType,
"_DATA"
)
if (fullMetadata) {
header <- c(Accept = "application/json;odata.metadata=full")
} else {
header <- c(Accept = "application/json;odata.metadata=minimal")
}
response <-
apiGET(
coreApi,
resource = resource,
query = query,
headers = header,
useVerbose = useVerbose
)
list(entity = response$content, response = response$response)
}
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