compute_density_from_table: Compute cell densities from counts and tissue area

In akoyabio/phenoptrReports: Create reports using Phenoptics data

Description

Compute cell density from a table of cell counts and a table of tissue areas.

Usage

compute_density_from_table(counts, areas, tissue_categories, .by = "Slide ID")

Arguments

counts	A data frame with columns for .by, Tissue Category, and counts, such as the output of count_phenotypes.
areas	A data frame containing tissue areas in cells / micron^2 with sample names and tissue categories matching counts.
tissue_categories	A character vector of tissue category names of interest.
.by	Column to aggregate by

Value

A data table with counts converted to density in cells / mm^2.

See Also

Other aggregation functions: compute_density_from_cell_summary(), compute_h_score_from_score_data(), compute_h_score(), compute_mean_expression_many(), compute_mean_expression(), compute_positivity_many(), compute_positivity(), count_phenotypes(), counts_to_percents()

akoyabio/phenoptrReports documentation built on Jan. 17, 2022, 6:22 p.m.