Description Usage Arguments Value
View source: R/mean_of_top_and_bottom_cells.R
Create reports showing mean expression of top and bottom cells
1 2 3 4 5 6 7 | mean_of_top_and_bottom_cells_report(
merge_file,
config_file,
by,
tissue_categories,
adjacent_max
)
|
merge_file |
Path to a merged or consolidated cell seg data file |
config_file |
Path to a configuration file containing column names in the merge file, one name per line. |
by |
Column to aggregate by, e.g. "Slide ID" or "Annotation ID". |
tissue_categories |
Tissue categories to report, or NULL to use all. |
adjacent_max |
The maximum ratio between expression of adjacent fluors. |
None
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