Description Usage Arguments Value See Also
Compute H-Score based on parameters in a score data file
1 2 3 4 5 6 7 | compute_h_score_from_score_data(
csd,
score_path,
tissue_categories = NULL,
.by = "Slide ID",
phenotype = NULL
)
|
csd |
Cell seg data to use. |
score_path |
Path to to a score_data file (may be merged or not). |
tissue_categories |
optionally specify tissue categories of interest. If not given, tissue categories are taken from the score file. |
.by |
Column to aggregate by |
phenotype |
Optional phenotype to subset |
A data frame with one row per Slide ID, showing cell counts and percents in each bin and the H-Score. See compute_h_score.
Other aggregation functions:
compute_density_from_cell_summary()
,
compute_density_from_table()
,
compute_h_score()
,
compute_mean_expression_many()
,
compute_mean_expression()
,
compute_positivity_many()
,
compute_positivity()
,
count_phenotypes()
,
counts_to_percents()
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