Files in alex-kalinka-cruk/crispRutils
Tools for working with CRISPR data.
.Rbuildignore
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
R/add_essential_genes.R
R/annotate_gene_sets_lfc_grna.R
R/calculate_library_width.R
R/calculate_sarles_bimodality.R
R/compile_qc_screens.R
R/data.R
R/find_desir_threshold_for_FDR.R
R/join_desirability_scores.R
R/make_AUPrRc.R
R/make_AUROC_df.R
R/make_pipeline_cleanr_library_file.R
R/plot.lfc_gene_sets.R
R/plot.synthetic_lethal.R
R/plot_PrRc_fgcQC.R
R/plot_ROC_fgcQC.R
R/plot_perf_curves_fgcQC.R
R/qc_plasmid_samples.R
R/read_bagel_gene_results.R
R/read_desirability_scores.R
R/read_mageck_gene_results.R
R/read_plasmid_samples.R
R/run_synth_lethal_analysis.R
R/union_essentials.R
R/utils-pipe.R
README.md
Rmd/compare_mageck_drugz.Rmd
Rmd/mageck-drugz-analysis--bimod.html
Rmd/mageck-drugz-analysis--gamma.html
Rmd/mageck-drugz-analysis.html
Rmd/pall-bimod.rds
Rmd/pall-gamma.rds
Rmd/pall.rds
crispRutils.Rproj
data-extra/HT29_c903.tsv
data-extra/HT29_c904.tsv
data-extra/HT29_c905.tsv
data-extra/HT29_c906.tsv
data-extra/HT29_c907.tsv
data-extra/HT29_c908.tsv
data-extra/mg_lfc.rda
data-extra/nz_lfc.rda
data-extra/yusa.v1.crisprn.annot.rda
data-extra/yusa.v3.crisprn.annot.rda
data/crispr_libs.rda
data/crispr_libs_annot_data.rda
man/add_essential_genes.Rd
man/annotate_gene_sets_lfc_grna.Rd
man/calculate_library_width.Rd
man/calculate_sarles_bimodality.Rd
man/crispr_libs.Rd
man/crispr_libs_annot_data.Rd
man/find_desir_threshold_for_FDR.Rd
man/join_desirability_scores.Rd
man/make_AUPrRc_df.Rd
man/make_AUROC_df.Rd
man/make_pipeline_cleanr_library_file.Rd
man/pipe.Rd
man/pipe_assign.Rd
man/plot.lfc_gene_sets.Rd
man/plot.synthetic_lethal.Rd
man/plot_PrRc_fgcQC.Rd
man/plot_ROC_fgcQC.Rd
man/plot_perf_curves_fgcQC.Rd
man/qc_plasmid_samples.Rd
man/read_bagel_gene_results.Rd
man/read_desirability_scores.Rd
man/read_mageck_gene_results.Rd
man/read_plasmid_samples.Rd
man/run_synth_lethal_analysis.Rd
man/union_essentials.Rd
