Files in alexandruioanvoda/gwascelltyper

Fast GWAS Enrichment Testing

R/data_docs.r R/download_dependencies.r R/enrichment_testing.r R/gene_scoring_big_matrices.r R/gwascelltyper.r R/prepare_sumstats.r README.MD man/all_hgnc_wtEntrez.Rd man/bin_specificity_into_quantiles.Rd man/compute_LDSC_enrichment_discrete.Rd man/compute_LDSC_enrichment_discrete_optimized.Rd man/compute_MAGMA_enrichment_discrete.Rd man/compute_MAGMA_enrichment_linear.Rd man/compute_SNPSEA_enrichment_discrete.Rd man/compute_SNPSEA_enrichment_linear.Rd man/compute_bjk_enrichment_discrete.Rd man/compute_ewce_scores_environ.Rd man/compute_ewce_selection_environ.Rd man/compute_t_stat_matrix_environ.Rd man/compute_t_stat_scores_environ.Rd man/compute_t_stat_selection_environ.Rd man/dep_path.Rd man/download_dependencies.Rd man/exp_environ_missingness.Rd man/finalStep_bjk_joint_test.Rd man/find_magma_version.Rd man/format_celltype_names.Rd man/gene_object_renamer.Rd man/generate_celltype_data_environ.Rd man/get_genomebuild_for_sumstats.Rd man/get_magma_paths.Rd man/get_os.Rd man/gwascelltyper.Rd man/make_geneset_from_score_matrix.Rd man/map_SNPs_to_genes_for_MAGMA.Rd man/matrix_missingness.Rd man/munge_sumstats_for_LDSC_from_MAGMA.Rd man/munge_sumstats_for_MAGMA.Rd man/munge_sumstats_for_SNPSEA_from_MAGMA.Rd man/range01.Rd man/read_exp_and_annot_environ.Rd man/sanity_check_for_exp_and_annot_environ.Rd man/snp_loc.Rd man/standard_sumstats_column_headers.Rd vignettes/bjk_joint_GWAS_enrichment_test.R vignettes/bjk_joint_GWAS_enrichment_test.Rmd vignettes/test_enrichment_in_two_genesets.R vignettes/test_enrichment_in_two_genesets.Rmd