compute_ewce_selection_environ: Compute top N% EWCE gene-sets - from environment-stored...

In alexandruioanvoda/gwascelltyper: Fast GWAS Enrichment Testing

Compute top N% EWCE gene-sets - from environment-stored expression data

Description

Compute top N% EWCE ranked genes for each cell-type. Output is a list of named character vectors, where each character vector represents a cell-type.

Usage

compute_ewce_selection_environ(
  obj,
  gene_selection_cutoff = 10,
  number_of_threads = 1
)

Arguments

obj	Environment object containing an exp (numeric matrix of genes-by-cell-ID) & an annot (dataframe of cell annotations).
gene_selection_cutoff	Selection cutoff as a percentile. Default = 10.
number_of_threads	Number of threads to parallelize calculation over. Default = 1.

Value

List

alexandruioanvoda/gwascelltyper documentation built on April 16, 2023, 8:03 p.m.