finalStep_bjk_joint_test: Compute the block jackknife joint test discrete

In alexandruioanvoda/gwascelltyper: Fast GWAS Enrichment Testing

Compute the block jackknife joint test discrete

Description

Compute GWAS enrichment in discrete lists of genes with the block jackknife joint test.

Usage

finalStep_bjk_joint_test(mat)

Arguments

mat

Dataframe containing blocked enrichment estimates (block == N) of enrichment and from whole data (block == 0). Needs to have 5 columns: Name (aka gene-set), P_value, BLOCK (1:200 as index of deleted block, 0 for whole data), method (in this case, LDSC or MAGMA) and Z (Z-score obtained from P-value).

Value

Dataframe

alexandruioanvoda/gwascelltyper documentation built on April 16, 2023, 8:03 p.m.