download_dependencies: Download dependencies

In alexandruioanvoda/gwascelltyper: Fast GWAS Enrichment Testing

Download dependencies

Description

Downloads data dependencies (e.g. linkage disequilibrium, gene annotations, etc.) pre-formatted for each of the 3 packages (LDSC, MAGMA & SNPsea)

Usage

download_dependencies(
  address = paste0(system.file(package = "gwascelltyper"), "/extdata/"),
  pop = c("eur", "eas", "afr", "amr", "sas", "subpop")[1]
)

Arguments

address	Path where dependencies are downloaded. Do not modify, parameter meant for developers.
pop	Population to download LD data for (available right now: eur; available soon: eas, afr, amr, sas, subpop).

Value

Path

alexandruioanvoda/gwascelltyper documentation built on April 16, 2023, 8:03 p.m.