generate_celltype_data_environ: Compute EWCE matrix - from environment-stored expression data
In alexandruioanvoda/gwascelltyper: Fast GWAS Enrichment Testing
View source: R/gene_scoring_big_matrices.r
generate_celltype_data_environ R Documentation
Compute EWCE matrix - from environment-stored expression data
Description
Compute gene-by-celltype specificity matrix with the EWCE score. Code modified from the EWCE package by Skene et al. (2016, DOI 10.3389/fnins.2016.00016).
Usage
generate_celltype_data_environ(obj, number_of_threads = 1)
Arguments
obj
Environment object containing an exp (numeric matrix of genes-by-cell-ID) & an annot (dataframe of cell annotations).
number_of_threads
Number of threads to parallelize calculation over. Default = 1.
Value
Dataframe
alexandruioanvoda/gwascelltyper documentation built on April 16, 2023, 8:03 p.m.
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View source: R/gene_scoring_big_matrices.r
| generate_celltype_data_environ | R Documentation |
Compute EWCE matrix - from environment-stored expression data
Description
Compute gene-by-celltype specificity matrix with the EWCE score. Code modified from the EWCE package by Skene et al. (2016, DOI 10.3389/fnins.2016.00016).
Usage
generate_celltype_data_environ(obj, number_of_threads = 1)
Arguments
obj |
Environment object containing an exp (numeric matrix of genes-by-cell-ID) & an annot (dataframe of cell annotations). |
number_of_threads |
Number of threads to parallelize calculation over. Default = 1. |
Value
Dataframe
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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