get_magma_paths: Get MAGMA paths
In alexandruioanvoda/gwascelltyper: Fast GWAS Enrichment Testing
get_magma_paths R Documentation
Get MAGMA paths
Description
Get or create MAGMA folders for the sumstats file provided. Outputs a path.
Usage
get_magma_paths(
sumstats_file,
upstream_kb,
downstream_kb,
pop,
gene_nomenclature
)
Arguments
sumstats_file
Path for summary statistics file.
upstream_kb
Kilobases upstream of gene to add.
downstream_kb
Kilobases downstream of gene to add.
pop
Population (default = eur)
gene_nomenclature
Gene nomenclature (default = hgnc)
Value
List
alexandruioanvoda/gwascelltyper documentation built on April 16, 2023, 8:03 p.m.
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| get_magma_paths | R Documentation |
Get MAGMA paths
Description
Get or create MAGMA folders for the sumstats file provided. Outputs a path.
Usage
get_magma_paths(
sumstats_file,
upstream_kb,
downstream_kb,
pop,
gene_nomenclature
)
Arguments
sumstats_file |
Path for summary statistics file. |
upstream_kb |
Kilobases upstream of gene to add. |
downstream_kb |
Kilobases downstream of gene to add. |
pop |
Population (default = eur) |
gene_nomenclature |
Gene nomenclature (default = hgnc) |
Value
List
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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