API for alexjgriffith/CCCA
Cross Condition ChIP Analyisis
| Global functions | |
|---|---|
| CCCA | Man page |
| CCCA-package | Man page |
| IUPACtoBase | Man page |
| PWMtoCons | Man page |
| addColnames | Man page |
| addFasta | Man page |
| addNames | Man page |
| addRownames | Man page |
| andM | Man page |
| applyPeakPartitions | Man page |
| chromGenomeSort | Man page |
| compliment | Man page |
| consenusIUPAC | Man page |
| convertChroms | Man page |
| createZip | Man page |
| distanceBetweenMotifs | Man page |
| findMotifDist | Man page |
| findSharedRegions | Man page |
| genEboxCombs | Man page |
| genSwapFun | Man page |
| geneRangeToRegion | Man page |
| geneRanges | Man page |
| generate | Man page |
| genomicRegions | Man page |
| getData | Man page |
| getDistance | Man page |
| getHeights | Man page |
| getMotifInfo | Man page |
| getPileUp | Man page |
| greatGeneAssoc | Man page |
| grepMotifs | Man page |
| heightHist | Man page |
| hg19Sort | Man page |
| histVisualize | Man page |
| homerWrapper | Man page |
| intersectN | Man page |
| ispalandrome | Man page |
| loadBedFile | Man page |
| loadPWM | Man page |
| locHist | Man page |
| locHist2 | Man page |
| lzip | Man page |
| mLength | Man page |
| mWidth | Man page |
| makeAFS | Man page |
| makeLogic | Man page |
| makeTable | Man page |
| mapziplist | Man page |
| modulous | Man page |
| mor | Man page |
| motifDistances | Man page |
| motifHist | Man page |
| motifString | Man page |
| motifs2View | Man page |
| multiPlot | Man page |
| nearSummit | Man page |
| normalize | Man page |
| numberIntersect | Man page |
| orM | Man page |
| orderBed | Man page |
| ors | Man page |
| overlap | Man page |
| pairwiseCombs | Man page |
| pass | Man page |
| pca | Man page |
| peakPartitions | Man page |
| peakRegions | Man page |
| pileUp | Man page |
| plotPCs | Man page |
| qn | Man page |
| qstem | Man page |
| rankChroms | Man page |
| readCategories | Man page |
| regionWrapper | Man page |
| reverseIUPAC | Man page |
| sel2 | Man page |
| sepAxis | Man page |
| shiftFromZero | Man page |
| simpleSwapFun | Man page |
| sortDataFrame | Man page |
| splitBlist | Man page |
| splitZip | Man page |
| stem | Man page |
| stringToSwap | Man page |
| unifyBedFile | Man page |
| unionN | Man page |
| unityOutput | Man page |
