Files in alexjgriffith/CCCA
Cross Condition ChIP Analyisis

.gitignore
CCCA.Rproj
DESCRIPTION
NAMESPACE
R/CCCA.r R/afs.r R/generateFasta.r R/height.r R/homerWrapper.r R/loadPWM.r R/makeLatexTable.R R/motifComparision.r R/motifUtils.r R/pca.r R/pcaUtils.r R/pkgname.r R/preferedDistance.r R/rGREAT.r R/stampWrapper.r R/temp.r R/utils.r README.md
inst/exdata/hg19.RefSeqGenes.csv
inst/scripts/A2R.r inst/scripts/afs-script.r
inst/scripts/buildcMethods.sh
inst/scripts/data.r inst/scripts/eboxFrequency.r
inst/scripts/git-push.sh
inst/scripts/temp-genfasta.r inst/scripts/test-heights.r inst/scripts/test-pca.r man-roxygen/authorTemplate.R man/CCCA.Rd man/IUPACtoBase.Rd man/PWMtoCons.Rd man/addColnames.Rd man/addFasta.Rd man/addNames.Rd man/addRownames.Rd man/andM.Rd man/applyPeakPartitions.Rd man/chromGenomeSort.Rd man/compliment.Rd man/consenusIUPAC.Rd man/convertChroms.Rd man/createZip.Rd man/distanceBetweenMotifs.Rd man/findMotifDist.Rd man/findSharedRegions.Rd man/genEboxCombs.Rd man/genSwapFun.Rd man/geneRangeToRegion.Rd man/geneRanges.Rd man/generate.Rd man/genomicRegions.Rd man/getData.Rd man/getDistance.Rd man/getHeights.Rd man/getMotifInfo.Rd man/getPileUp.Rd man/greatGeneAssoc.Rd man/grepMotifs.Rd man/heightHist.Rd man/hg19Sort.Rd man/histVisualize.Rd man/homerWrapper.Rd man/intersectN.Rd man/ispalandrome.Rd man/loadBedFile.Rd man/loadPWM.Rd man/locHist.Rd man/locHist2.Rd man/lzip.Rd man/mLength.Rd man/mWidth.Rd man/makeAFS.Rd man/makeLogic.Rd man/makeTable.Rd man/mapziplist.Rd man/modulous.Rd man/mor.Rd man/motifDistances.Rd man/motifHist.Rd man/motifString.Rd man/motifs2View.Rd man/multiPlot.Rd man/nearSummit.Rd man/normalize.Rd man/numberIntersect.Rd man/orM.Rd man/orderBed.Rd man/ors.Rd man/overlap.Rd man/pairwiseCombs.Rd man/pass.Rd man/pca.Rd man/peakPartitions.Rd man/peakRegions.Rd man/pileUp.Rd man/plotPCs.Rd man/qn.Rd man/qstem.Rd man/rankChroms.Rd man/readCategories.Rd man/regionWrapper.Rd man/reverseIUPAC.Rd man/sel2.Rd man/sepAxis.Rd man/shiftFromZero.Rd man/simpleSwapFun.Rd man/sortDataFrame.Rd man/splitBlist.Rd man/splitZip.Rd man/stem.Rd man/stringToSwap.Rd man/unifyBedFile.Rd man/unionN.Rd man/unityOutput.Rd
src/CCCA.c
src/CCCA.h
src/genFasta.c
src/height.c
src/height.h
src/hrange.c
src/hrange.h
src/region.c
src/region.h
alexjgriffith/CCCA documentation built on June 3, 2017, 3:55 p.m.