Files in alexjgriffith/CCCA
Cross Condition ChIP Analyisis
.gitignore
CCCA.Rproj
DESCRIPTION
NAMESPACE
R/CCCA.r
R/afs.r
R/generateFasta.r
R/height.r
R/homerWrapper.r
R/loadPWM.r
R/makeLatexTable.R
R/motifComparision.r
R/motifUtils.r
R/pca.r
R/pcaUtils.r
R/pkgname.r
R/preferedDistance.r
R/rGREAT.r
R/stampWrapper.r
R/temp.r
R/utils.r
README.md
inst/exdata/hg19.RefSeqGenes.csv
inst/scripts/A2R.r
inst/scripts/afs-script.r
inst/scripts/buildcMethods.sh
inst/scripts/data.r
inst/scripts/eboxFrequency.r
inst/scripts/git-push.sh
inst/scripts/temp-genfasta.r
inst/scripts/test-heights.r
inst/scripts/test-pca.r
man-roxygen/authorTemplate.R
man/CCCA.Rd
man/IUPACtoBase.Rd
man/PWMtoCons.Rd
man/addColnames.Rd
man/addFasta.Rd
man/addNames.Rd
man/addRownames.Rd
man/andM.Rd
man/applyPeakPartitions.Rd
man/chromGenomeSort.Rd
man/compliment.Rd
man/consenusIUPAC.Rd
man/convertChroms.Rd
man/createZip.Rd
man/distanceBetweenMotifs.Rd
man/findMotifDist.Rd
man/findSharedRegions.Rd
man/genEboxCombs.Rd
man/genSwapFun.Rd
man/geneRangeToRegion.Rd
man/geneRanges.Rd
man/generate.Rd
man/genomicRegions.Rd
man/getData.Rd
man/getDistance.Rd
man/getHeights.Rd
man/getMotifInfo.Rd
man/getPileUp.Rd
man/greatGeneAssoc.Rd
man/grepMotifs.Rd
man/heightHist.Rd
man/hg19Sort.Rd
man/histVisualize.Rd
man/homerWrapper.Rd
man/intersectN.Rd
man/ispalandrome.Rd
man/loadBedFile.Rd
man/loadPWM.Rd
man/locHist.Rd
man/locHist2.Rd
man/lzip.Rd
man/mLength.Rd
man/mWidth.Rd
man/makeAFS.Rd
man/makeLogic.Rd
man/makeTable.Rd
man/mapziplist.Rd
man/modulous.Rd
man/mor.Rd
man/motifDistances.Rd
man/motifHist.Rd
man/motifString.Rd
man/motifs2View.Rd
man/multiPlot.Rd
man/nearSummit.Rd
man/normalize.Rd
man/numberIntersect.Rd
man/orM.Rd
man/orderBed.Rd
man/ors.Rd
man/overlap.Rd
man/pairwiseCombs.Rd
man/pass.Rd
man/pca.Rd
man/peakPartitions.Rd
man/peakRegions.Rd
man/pileUp.Rd
man/plotPCs.Rd
man/qn.Rd
man/qstem.Rd
man/rankChroms.Rd
man/readCategories.Rd
man/regionWrapper.Rd
man/reverseIUPAC.Rd
man/sel2.Rd
man/sepAxis.Rd
man/shiftFromZero.Rd
man/simpleSwapFun.Rd
man/sortDataFrame.Rd
man/splitBlist.Rd
man/splitZip.Rd
man/stem.Rd
man/stringToSwap.Rd
man/unifyBedFile.Rd
man/unionN.Rd
man/unityOutput.Rd
src/CCCA.c
src/CCCA.h
src/genFasta.c
src/height.c
src/height.h
src/hrange.c
src/hrange.h
src/region.c
src/region.h
