addFasta: Add Fasta

Description Usage Arguments Value

Description

Appends a Biostrings Object to ENV containing the base pair infromation for each peak. The input env list is reqired to have a bed value that contains a start and an chr. The mean of the start and end values is extended by the width and used to find the base pair infromation of interest

Usage

1
addFasta(env, genome = BSgenome.Hsapiens.UCSC.hg19, width = 300)

Arguments

env

A list containing the location of the peaks

genome

the genome to which the locations apply

width

the width of the peaks

Value

env with an attached fasta parameter


alexjgriffith/CCCA documentation built on May 10, 2019, 8:52 a.m.