chromGenomeSort: Chrom Genome Sort
In alexjgriffith/CCCA: Cross Condition ChIP Analyisis
Description
Usage
Arguments
Examples
Description
Returns a function that reorders the peak data based on the chromosome order provided
Usage
1
chromGenomeSort(chromOrder)
Arguments
chromOrder
A list of chromosomes to be found in the data
Examples
1
2
3
4
5
6
sortedChroms<-strsplit("chr1 chr2 chr3 chr4 chr5 chr6 chr7 chrX
chr8 chr9 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17
chr18 chr20 chrY chr19 chr22 chr21 chrM" ," ")[[1]]
hg19Sort<-chromGenomeSort(sortedChroms)
bedData<-loadBedData("test.bed")
sortedBedData<-hg19Sort(bedData)
alexjgriffith/CCCA documentation built on May 10, 2019, 8:52 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Examples
Description
Returns a function that reorders the peak data based on the chromosome order provided
Usage
1 | chromGenomeSort(chromOrder)
|
Arguments
chromOrder |
A list of chromosomes to be found in the data |
Examples
1 2 3 4 5 6 | sortedChroms<-strsplit("chr1 chr2 chr3 chr4 chr5 chr6 chr7 chrX
chr8 chr9 chr10 chr11 chr12 chr13 chr14 chr15 chr16 chr17
chr18 chr20 chrY chr19 chr22 chr21 chrM" ," ")[[1]]
hg19Sort<-chromGenomeSort(sortedChroms)
bedData<-loadBedData("test.bed")
sortedBedData<-hg19Sort(bedData)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.