API for alexjgriffith/CCCA
Cross Condition ChIP Analyisis

Global functions
CCCA Man page
CCCA-package Man page
IUPACtoBase Man page Source code
PWMtoCons Man page Source code
addColnames Man page Source code
addFasta Man page Source code
addNames Man page Source code
addRownames Man page Source code
andM Man page Source code
applyPeakPartitions Man page Source code
bed2Fasta Source code
chromGenomeSort Man page Source code
compliment Man page Source code
consenusIUPAC Man page Source code
convertChroms Man page Source code
createZip Man page Source code
distanceBetweenMotifs Man page Source code
findMotifDist Man page Source code
findSharedRegions Man page Source code
genEboxCombs Man page Source code
genFasta Source code
genFastaIndex Source code
genSwapFun Man page Source code
geneRangeToRegion Man page Source code
geneRanges Man page Source code
generate Man page Source code
genomicRegions Man page Source code
getChroms Source code
getData Man page Source code
getDistance Man page Source code
getHeights Man page Source code
getMotifInfo Man page Source code
getPeakDensity Source code
getPileUp Man page Source code
greatGeneAssoc Man page Source code
grepMotifs Man page Source code
heightHist Man page Source code
hg19Sort Man page Source code
histVisualize Man page Source code
homerWrapper Man page Source code
intersectN Man page Source code
ispalandrome Man page Source code
loadBedFile Man page Source code
loadPWM Man page Source code
locHist Man page Source code
locHist2 Man page Source code
lzip Man page Source code
mLength Man page Source code
mWidth Man page Source code
makeAFS Man page Source code
makeLogic Man page Source code
makeTable Man page Source code
mapziplist Man page Source code
modulous Man page Source code
mor Man page Source code
motifDistances Man page Source code
motifHist Man page Source code
motifString Man page Source code
motifs2View Man page Source code
multiPlot Man page Source code
nearSummit Man page Source code
normalize Man page Source code
numberIntersect Man page Source code
orM Man page Source code
orderBed Man page Source code
ors Man page Source code
overlap Man page Source code
pairwiseCombs Man page Source code
pass Man page Source code
pca Man page Source code
peakDensity Source code
peakPartitions Man page Source code
peakRegions Man page Source code
pileUp Man page Source code
plotPCs Man page Source code
qn Man page Source code
qstem Man page Source code
rankChroms Man page Source code
readCategories Man page
regionWrapper Man page Source code
reverseIUPAC Man page Source code
saveFasta Source code
saveFastaIndex Source code
sel2 Man page Source code
sepAxis Man page Source code
shiftFromZero Man page Source code
simpleSwapFun Man page Source code
sortDataFrame Man page Source code
splitBlist Man page Source code
splitZip Man page Source code
stampWrapper Source code
stem Man page Source code
stringToSwap Man page Source code
unifyBedFile Man page Source code
unionN Man page Source code
unityOutput Man page Source code
alexjgriffith/CCCA documentation built on June 3, 2017, 3:55 p.m.