API for alexpiper/taxreturn
An R package for retrieving and curating public DNA barcode reference data
| Global functions | |
|---|---|
| %>% | Man page |
| .findExecutable | Man page Source code |
| .hex | Man page |
| .ishex | Man page |
| .unhex | Man page |
| DNAbin2DNAstringset | Man page |
| DNAbin2char | Man page Source code |
| acc2hex | Man page Source code |
| acc_from_fasta | Man page |
| alignment_entropy | Man page |
| blast | Man page |
| blast_assign_species | Man page |
| blast_install | Man page Source code |
| blast_params | Man page |
| blast_top_hit | Man page |
| char2DNAbin | Man page |
| chunk_seqs | Source code |
| clean_seqs | Man page Source code |
| closest_seq | Man page Source code |
| codon_entropy | Man page Source code |
| codon_filter | Man page Source code |
| concat_DNAbin | Man page Source code |
| download_ott_taxonomy | Man page Source code |
| fetchSeqs | Man page Source code |
| fetch_bold | Man page Source code |
| fetch_genbank | Man page Source code |
| fetch_seqs | Man page |
| filt_phmm | Source code |
| filter_by_tax | Man page |
| filter_infraspecifc | Man page |
| filter_unplaced | Man page |
| get_binding_position | Man page |
| get_mixed_clusters | Man page |
| get_ncbi_lineage | Man page Source code |
| get_ncbi_synonyms | Man page Source code |
| get_ncbi_taxonomy | Man page Source code |
| get_ott_lineage | Man page |
| get_ott_taxonomy | Man page Source code |
| get_reading_frame | Man page Source code |
| get_subalignment | Man page Source code |
| gid_to_acc | Man page Source code |
| graft_tips | Man page |
| hex2acc | Man page |
| kmer_screen | Man page Source code |
| lca_probs | Man page |
| make_blast_db | Man page |
| makeblastdb | Man page |
| map_to_model | Man page Source code |
| map_to_ott | Man page |
| model | Man page |
| ncbi_taxid | Man page Source code |
| pad_alignment | Man page Source code |
| parse_gb | Man page Source code |
| parse_ott_synonyms | Man page |
| propagate_tax | Man page Source code |
| prune_groups | Man page Source code |
| random_seq | Man page Source code |
| read_bold_chunk | Man page Source code |
| read_genbank_chunk | Man page Source code |
| reformat_dada2_gen | Man page |
| reformat_dada2_spp | Man page |
| reformat_hierarchy | Man page Source code |
| resolve_synonyms_ncbi | Man page Source code |
| setup_multithread | Man page |
| setup_para | Man page |
| split_bold_query | Man page Source code |
| subset_long_seq | Source code |
| subset_model | Man page Source code |
| summarise_fasta | Man page |
| tax2phylo | Man page |
| tax2tree | Man page |
| train_idtaxa | Man page |
| write_fasta | Man page Source code |
