reformat_dada2_gen: Reformat DADA2 Genus
In alexpiper/taxreturn: An R package for retrieving and curating public DNA barcode reference data
reformat_dada2_gen R Documentation
Reformat DADA2 Genus
Description
Reformat DADA2 Genus
Usage
reformat_dada2_gen(
x,
db = NULL,
ranks = c("kingdom", "phylum", "class", "order", "family", "genus"),
quiet = FALSE
)
Arguments
x
A DNAbin or DNAStringSet object with names in format accession|tax_id;Genus species
db
A database file generated by get_ncbi_taxonomy or get_ott_lineage. Required if get_lineage is TRUE
ranks
The taxonomic ranks to include in output. default is kingdom;phylum;class;order;family;genus
quiet
Whether progress should be printed to the console.
alexpiper/taxreturn documentation built on Sept. 14, 2024, 7:56 p.m.
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| reformat_dada2_gen | R Documentation |
Reformat DADA2 Genus
Description
Reformat DADA2 Genus
Usage
reformat_dada2_gen(
x,
db = NULL,
ranks = c("kingdom", "phylum", "class", "order", "family", "genus"),
quiet = FALSE
)
Arguments
x |
A DNAbin or DNAStringSet object with names in format |
db |
A database file generated by |
ranks |
The taxonomic ranks to include in output. default is kingdom;phylum;class;order;family;genus |
quiet |
Whether progress should be printed to the console. |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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