getDefaultFileLocations: Get file locations of Data
In alice-szeliga/keles-pipeline: A Model to Predict Regulatory and Expression Modulating eQTLs
Description
Arguments
Details
Value
Description
getDefaultFileLocations sets and loads file paths of important data.
Arguments
uniprobeDirectory:
string, location of /Uniprobe scores
Should have /Human and /Mouse subdirectories
chipLocation:
string, location of ENCODE ChIP-seq metadata
dnaseLocation:
string, location of ENCODE DNase-seq metadata
dnamethLocation:
string, location of ENCODE DNA methylation metadata
peakDir:
string, directory of ENCODE peaks
inputDTFile:
string, location of eQTL data to analyze
Data set from CAGI 2015 challenge is /ProcessedData/SampleDT.Rdata
outputDir:
string, directory to save output in
Details
These locations are only stored here in the package. This is the only place
that default locations need to be changed. Default locations set for
Keles' lab's server.
The ENCODE data are peak/bed files obtained from encodeproject.org
Value
A list
alice-szeliga/keles-pipeline documentation built on May 12, 2019, 5:35 a.m.
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Description Arguments Details Value
Description
getDefaultFileLocations sets and loads file paths of important data.
Arguments
uniprobeDirectory: |
string, location of /Uniprobe scores Should have /Human and /Mouse subdirectories |
chipLocation: |
string, location of ENCODE ChIP-seq metadata |
dnaseLocation: |
string, location of ENCODE DNase-seq metadata |
dnamethLocation: |
string, location of ENCODE DNA methylation metadata |
peakDir: |
string, directory of ENCODE peaks |
inputDTFile: |
string, location of eQTL data to analyze Data set from CAGI 2015 challenge is /ProcessedData/SampleDT.Rdata |
outputDir: |
string, directory to save output in |
Details
These locations are only stored here in the package. This is the only place that default locations need to be changed. Default locations set for Keles' lab's server. The ENCODE data are peak/bed files obtained from encodeproject.org
Value
A list
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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