runFimo: Run Fimo
In alice-szeliga/keles-pipeline: A Model to Predict Regulatory and Expression Modulating eQTLs
Description
Sends a system command to run FIMO
Arguments
memeFimoDir:
string, path of fimo directory for MEME
outDir:
string, location to save to
pwmFiles:
list of strings, locations of PWM for ENCODE, Factorbook, and Jaspar
factorName:
string, created by getFactorName
fastaFile:
string, created by getFastaName
alice-szeliga/keles-pipeline documentation built on May 12, 2019, 5:35 a.m.
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Description
Sends a system command to run FIMO
Arguments
memeFimoDir: |
string, path of fimo directory for MEME |
outDir: |
string, location to save to |
pwmFiles: |
list of strings, locations of PWM for ENCODE, Factorbook, and Jaspar |
factorName: |
string, created by getFactorName |
fastaFile: |
string, created by getFastaName |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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