run_encode: ENCODE data
In alice-szeliga/keles-pipeline: A Model to Predict Regulatory and Expression Modulating eQTLs
Description
run_encode is the main function for interpreting ChIP, DNase, and DNA methylation data
Details
Relies on output from uniprobe_run_Uniprobe_scores.R.
Depends on encode_extract_encodePeaks.R, encode_DFToGranges.R, and
encode_construct_overlapping.encodepeaks.narrow1_SS.R.
Default locations set for Keles' lab and are read in from
base_getDefaultFileLocations.R.
Value
Null. Data saved to disk.
alice-szeliga/keles-pipeline documentation built on May 12, 2019, 5:35 a.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description
run_encode is the main function for interpreting ChIP, DNase, and DNA methylation data
Details
Relies on output from uniprobe_run_Uniprobe_scores.R. Depends on encode_extract_encodePeaks.R, encode_DFToGranges.R, and encode_construct_overlapping.encodepeaks.narrow1_SS.R. Default locations set for Keles' lab and are read in from base_getDefaultFileLocations.R.
Value
Null. Data saved to disk.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.