getMetaPeaks: Combines all peak files from ENCODE
In alice-szeliga/keles-pipeline: A Model to Predict Regulatory and Expression Modulating eQTLs
Description
readChip reads in ChIP seq, DNase seq, DNAmethylation and combines
the peaks into one file
Arguments
chipLocation:
string, file location of ENCODE ChIP metadata.tsv
dnaseLocation:
string, file location of ENCODE DNase metadata.tsv
dnamethLocation:
string, file location of ENCODE DNA methylation
metadata.tsv
Value
data.table containing all info from ChIP, DNase, and DNA methylation
alice-szeliga/keles-pipeline documentation built on May 12, 2019, 5:35 a.m.
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Description
readChip reads in ChIP seq, DNase seq, DNAmethylation and combines
the peaks into one file
Arguments
chipLocation: |
string, file location of ENCODE ChIP metadata.tsv |
dnaseLocation: |
string, file location of ENCODE DNase metadata.tsv |
dnamethLocation: |
string, file location of ENCODE DNA methylation metadata.tsv |
Value
data.table containing all info from ChIP, DNase, and DNA methylation
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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